<?php
/**
* @file api/v1/dois/DoiHandler.php
*
* Copyright (c) 2014-2021 Simon Fraser University
* Copyright (c) 2003-2021 John Willinsky
* Distributed under the GNU GPL v3. For full terms see the file docs/COPYING.
*
* @class DoiHandler
*
* @ingroup api_v1_dois
*
* @brief Handle API requests for DOI operations.
*
*/
namespace APP\API\v1\dois;
use APP\facades\Repo;
use APP\issue\Issue;
use APP\jobs\doi\DepositIssue;
use PKP\context\Context;
use PKP\core\APIResponse;
use PKP\doi\Doi;
use PKP\doi\exceptions\DoiException;
use PKP\security\Role;
use Slim\Http\Request as SlimRequest;
use Slim\Http\Response;
class DoiHandler extends \PKP\API\v1\dois\PKPDoiHandler
{
/**
* Constructor
*/
public function __construct()
{
$this->_handlerPath = 'dois';
$this->_endpoints = array_merge_recursive($this->_endpoints, [
'POST' => [
[
'pattern' => $this->getEndpointPattern() . '/issues/assignDois',
'handler' => [$this, 'assignIssueDois'],
'roles' => [Role::ROLE_ID_MANAGER, Role::ROLE_ID_SITE_ADMIN]
]
],
'PUT' => [
[
'pattern' => $this->getEndpointPattern() . '/issues/export',
'handler' => [$this, 'exportIssues'],
'roles' => [Role::ROLE_ID_MANAGER, Role::ROLE_ID_SITE_ADMIN],
],
[
'pattern' => $this->getEndpointPattern() . '/issues/deposit',
'handler' => [$this, 'depositIssues'],
'roles' => [Role::ROLE_ID_MANAGER, Role::ROLE_ID_SITE_ADMIN],
],
[
'pattern' => $this->getEndpointPattern() . '/issues/markRegistered',
'handler' => [$this, 'markIssuesRegistered'],
'roles' => [Role::ROLE_ID_MANAGER, Role::ROLE_ID_SITE_ADMIN],
],
[
'pattern' => $this->getEndpointPattern() . '/issues/markUnregistered',
'handler' => [$this, 'markIssuesUnregistered'],
'roles' => [Role::ROLE_ID_MANAGER, Role::ROLE_ID_SITE_ADMIN],
],
[
'pattern' => $this->getEndpointPattern() . '/issues/markStale',
'handler' => [$this, 'markIssuesStale'],
'roles' => [Role::ROLE_ID_MANAGER, Role::ROLE_ID_SITE_ADMIN],
],
],
]);
parent::__construct();
}
/**
* Export XML for configured DOI registration agency
*/
public function exportIssues(SlimRequest $slimRequest, APIResponse $response, array $args): Response
{
// Retrieve and validate issues
$requestIds = $slimRequest->getParsedBody()['ids'] ?? [];
if (!count($requestIds)) {
return $response->withStatus(404)->withJsonError('api.dois.404.noPubObjectIncluded');
}
$context = $this->getRequest()->getContext();
$validIds = Repo::issue()
->getCollector()
->filterByContextIds([$context->getId()])
->filterByPublished(true)
->getIds()
->toArray();
$invalidIds = array_diff($requestIds, $validIds);
if (count($invalidIds)) {
return $response->withStatus(400)->withJsonError('api.dois.400.invalidPubObjectIncluded');
}
/** @var Issue[] $issues */
$issues = [];
foreach ($requestIds as $id) {
$issues[] = Repo::issue()->get($id);
}
if (empty($issues[0])) {
return $response->withStatus(404)->withJsonError('api.dois.404.doiNotFound');
}
$agency = $context->getConfiguredDoiAgency();
if ($agency === null) {
return $response->withStatus(400)->withJsonError('api.dois.400.noRegistrationAgencyConfigured');
}
// Invoke IDoiRegistrationAgency::exportIssues
$responseData = $agency->exportIssues($issues, $context);
if (!empty($responseData['xmlErrors'])) {
return $response->withStatus(400)->withJsonError('api.dois.400.xmlExportFailed');
}
return $response->withJson(['temporaryFileId' => $responseData['temporaryFileId']], 200);
}
/**
* Deposit XML for configured DOI registration agency
*/
public function depositIssues(SlimRequest $slimRequest, APIResponse $response, array $args): Response
{
// Retrieve and validate issues
$requestIds = $slimRequest->getParsedBody()['ids'] ?? [];
if (!count($requestIds)) {
return $response->withStatus(404)->withJsonError('api.dois.404.noPubObjectIncluded');
}
$context = $this->getRequest()->getContext();
$validIds = Repo::issue()
->getCollector()
->filterByContextIds([$context->getId()])
->filterByPublished(true)
->getIds()
->toArray();
$invalidIds = array_diff($requestIds, $validIds);
if (count($invalidIds)) {
return $response->withStatus(400)->withJsonError('api.dois.400.invalidPubObjectIncluded');
}
$agency = $context->getConfiguredDoiAgency();
if ($agency === null) {
return $response->withStatus(400)->withJsonError('api.dois.400.noRegistrationAgencyConfigured');
}
$doisToUpdate = [];
foreach ($requestIds as $issueId) {
dispatch(new DepositIssue($issueId, $context, $agency));
array_merge($doisToUpdate, Repo::doi()->getDoisForIssue($issueId));
}
Repo::doi()->markSubmitted($doisToUpdate);
return $response->withStatus(200);
}
/**
* Mark submission DOIs as registered with a DOI registration agency.
*/
public function markIssuesRegistered(SlimRequest $slimRequest, APIResponse $response, array $args): Response
{
// Retrieve issues
$requestIds = $slimRequest->getParsedBody()['ids'] ?? [];
if (!count($requestIds)) {
return $response->withStatus(404)->withJsonError('api.dois.404.noPubObjectIncluded');
}
$context = $this->getRequest()->getContext();
$validIds = Repo::issue()
->getCollector()
->filterByContextIds([$context->getId()])
->filterByPublished(true)
->getIds()
->toArray();
$invalidIds = array_diff($requestIds, $validIds);
if (count($invalidIds)) {
$failedDoiActions = array_map(function (int $id) {
$issueTitle = Repo::issue()->get($id)?->getIssueIdentification() ?? 'Issue not found';
return new DoiException(DoiException::ISSUE_NOT_PUBLISHED, $issueTitle, $issueTitle);
}, $invalidIds);
return $response->withJson(
[
'failedDoiActions' => array_map(
function (DoiException $item) {
return $item->getMessage();
},
$failedDoiActions
)
],
400
);
}
foreach ($requestIds as $id) {
$doiIds = Repo::doi()->getDoisForIssue($id);
foreach ($doiIds as $doiId) {
Repo::doi()->markRegistered($doiId);
}
}
return $response->withStatus(200);
}
/**
* Mark issues DOIs as no longer registered with a DOI registration agency.
*/
public function markIssuesUnregistered(SlimRequest $slimRequest, APIResponse $response, array $args): Response
{
// Retrieve issues
$requestIds = $slimRequest->getParsedBody()['ids'] ?? [];
if (!count($requestIds)) {
return $response->withStatus(404)->withJsonError('api.dois.404.noPubObjectIncluded');
}
$context = $this->getRequest()->getContext();
$validIds = Repo::issue()
->getCollector()
->filterByContextIds([$context->getId()])
->getIds()
->toArray();
$invalidIds = array_diff($requestIds, $validIds);
if (count($invalidIds)) {
$failedDoiActions = array_map(function (int $id) {
$issueTitle = Repo::issue()->get($id)?->getIssueIdentification() ?? 'Issue not found';
return new DoiException(DoiException::INCORRECT_ISSUE_CONTEXT, $issueTitle, $issueTitle);
}, $invalidIds);
return $response->withJson(
[
'failedDoiActions' => array_map(
function (DoiException $item) {
return $item->getMessage();
},
$failedDoiActions
)
],
400
);
}
foreach ($requestIds as $id) {
$doiIds = Repo::doi()->getDoisForIssue($id);
foreach ($doiIds as $doiId) {
Repo::doi()->markUnregistered($doiId);
}
}
return $response->withStatus(200);
}
/**
* Mark submission DOIs as stale, indicating a need to be resubmitted to registration agency with updated metadata.
*/
public function markIssuesStale(SlimRequest $slimRequest, APIResponse $response, array $args): Response
{
// Retrieve issues
$requestIds = $slimRequest->getParsedBody()['ids'] ?? [];
if (!count($requestIds)) {
return $response->withStatus(404)->withJsonError('api.dois.404.noPubObjectIncluded');
}
$context = $this->getRequest()->getContext();
$validIds = Repo::issue()
->getCollector()
->filterByContextIds([$context->getId()])
->filterByPublished(true)
// Items can only be considered stale if they have been deposited/queued for deposit in the first place
->filterByDoiStatuses([Doi::STATUS_SUBMITTED, Doi::STATUS_REGISTERED])
->getIds()
->toArray();
$invalidIds = array_diff($requestIds, $validIds);
if (count($invalidIds)) {
$failedDoiActions = array_map(function (int $id) {
$issueTitle = Repo::issue()->get($id)?->getIssueIdentification() ?? 'Issue not found';
return new DoiException(DoiException::INCORRECT_STALE_STATUS, $issueTitle, $issueTitle);
}, $invalidIds);
return $response->withJson(
[
'failedDoiActions' => array_map(
function (DoiException $item) {
return $item->getMessage();
},
$failedDoiActions
)
],
400
);
}
foreach ($requestIds as $id) {
$doiIds = Repo::doi()->getDoisForIssue($id);
Repo::doi()->markStale($doiIds);
}
return $response->withStatus(200);
}
/**
* Assign DOIs to issue
*/
public function assignIssueDois(SlimRequest $slimRequest, APIResponse $response, array $args): Response
{
// Retrieve issues
$ids = $slimRequest->getParsedBody()['ids'] ?? [];
if (!count($ids)) {
return $response->withStatus(404)->withJsonError('api.issue.404.issuesNotFound');
}
$context = $this->getRequest()->getContext();
$doiPrefix = $context->getData(Context::SETTING_DOI_PREFIX);
if (empty($doiPrefix)) {
return $response->withStatus(403)->withJsonError('api.dois.403.prefixRequired');
}
$failedDoiActions = [];
// Assign DOIs
foreach ($ids as $id) {
$issue = Repo::issue()->get($id);
if ($issue !== null) {
$creationFailureResults = Repo::issue()->createDoi($issue);
$failedDoiActions = array_merge($failedDoiActions, $creationFailureResults);
}
}
if (!empty($failedDoiActions)) {
return $response->withJson(
[
'failedDoiActions' => array_map(
function (DoiException $item) {
return $item->getMessage();
},
$failedDoiActions
)
],
400
);
}
return $response->withJson(['failedDoiActions' => $failedDoiActions], 200);
}
/**
* @copydoc PKPDoiHandler::getPubObjectHandler()
*/
protected function getPubObjectHandler(string $type): mixed
{
$handler = parent::getPubObjectHandler($type);
if ($handler !== null) {
return $handler;
}
return match ($type) {
Repo::doi()::TYPE_ISSUE => Repo::issue(),
default => null,
};
}
}
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